Thom Quinn's guest appearances

Thom Quinn

the bioinformatics chat

David Kelley

Irineo Cabreros

Romain Lopez

Gabriel Misrachi

Hassan Samee

Kristina Grigaityte

Jacob Schreiber

Simeon Carstens

Trevor Pesout

HoJoon Lee

Seung Woo Cho

Kaushik Panda

Keith Slotkin

Fernando Portela

Chang Xu

OwlTail

In this episode, Thom Quinn and I explore different waysto transform and analyze relative data arising in genomics. We also discusspropr, Thom’s Rpackage to compute various proportionality measures. Links:  Thom’s preprint about propr —   take a look if you feel lost in all the quantities that we discuss :) David Lovell original paper introducing proportionality for relative data  and a very detailed appendix Ionas Erb’s paper introducing the ρ metric Vignettes for propr  If you enjoyed this episode, please consider supporting the podcast on Patreon!

In this episode, <a href="https://tpq.github.io/" rel="nofollow" target="_blank">Thom Quinn</a> and I explore different ways to transform and analyze relative data arising in genomics. We also discuss <a href="https://cran.r-project.org/web/packages/propr/index.html" rel="nofollow" target="_blank">propr</a>, Thom’s R package to compute various proportionality measures. Links: <ul> <li><a href="http://biorxiv.org/content/early/2017/02/01/104935" rel="nofollow" target="_blank">Thom’s preprint about propr</a> — take a look if you feel lost in all the quantities that we discuss :)</li> <li><a href="http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004075" rel="nofollow" target="_blank">David Lovell original paper introducing proportionality for relative data</a> and a <a href="http://journals.plos.org/ploscompbiol/article/file?type=supplementary&amp;id=info:doi/10.1371/journal.pcbi.1004075.s011" rel="nofollow" target="_blank">very detailed appendix</a></li> <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/26762323" rel="nofollow" target="_blank">Ionas Erb’s paper introducing the ρ metric</a></li> <li><a href="https://cran.r-project.org/web/packages/propr/vignettes/" rel="nofollow" target="_blank">Vignettes for propr</a></li> </ul> If you enjoyed this episode, please consider supporting the podcast on <a href="https://www.patreon.com/bioinfochat" rel="nofollow" target="_blank">Patreon</a>!

#5 Relative data analysis and propr with Thom Quinn